Journal of Jilin University(Medicine Edition) ›› 2023, Vol. 49 ›› Issue (4): 913-922.doi: 10.13481/j.1671-587X.20230412
• Research in basic medicine • Previous Articles Next Articles
Sihan LAI,Juntong LIU,Luying TAN,Jinping LIU(
),Pingya LI(
)
Received:2022-10-22
Online:2023-07-28
Published:2023-07-26
Contact:
Jinping LIU,Pingya LI
E-mail:liujp@jlu.edu.cn;lipy@jlu.edu.cn
CLC Number:
Sihan LAI,Juntong LIU,Luying TAN,Jinping LIU,Pingya LI. Network pharmacology and molecular docking analysis on anti-ischemic stroke mechanism of Panax quinquefolium triolsaponins[J].Journal of Jilin University(Medicine Edition), 2023, 49(4): 913-922.
Tab. 1
UPLC-Q-TOF-MS identification results of chemical compositions of PQTS"
| Number | Chemical composition | CAS |
|---|---|---|
| 1 | Yesanchinoside B | 416843-85-1 |
| 2 | Quinquenoside L9 | 412328-82-6 |
| 3 | Yesanchinoside C | 416843-86-2 |
| 4 | Quinquenoside F6 | 1255210-79-7 |
| 5 | Yesanchinoside E | 416843-87-3 |
| 6 | (24S)-Pseudo-ginsenoside F11 | 102805-33-4 |
| 7 | Ginsenoside Rg1 | 22427-39-0 |
| 8 | Ginsenoside Re | 52286-59-6 |
| 9 | Ginsenoside Rb1 | 41753-43-9 |
| 10 | Majoroside F5 | 125309-99-1 |
| 11 | Ginsenoside F1 | 53963-43-2 |
| 12 | Vinaginsenoside R1 | 156980-41-5 |
| 13 | (20R)-Dammar-20, 25-epoxy-3β, 6α, 7β, 12β, 15α-pentaol | - |
| 14 | Pseudo-ginsenoside F11 | 69884-00-0 |
| 15 | Pseudo-ginsenoside RT4 | 98474-77-2 |
| 16 | Pseudo-ginsenoside RT5 | 98474-78-3 |
| 17 | Ginsenoside A | 193895-21-5 |
| 18 | Ginsenoside F5 | 189513-26-6 |
| 19 | Dammar-3β,6α,12β,20R,25-pentaol | - |
| 20 | Ginsenoside Rg2 | 52286-74-5 |
| 21 | Ocotillol | 5986-39-0 |
| 22 | Ginsenoside F3 | 62025-50-7 |
| 23 | Ginsenoside Rh1 | 80952-71-2 |
| 24 | Vinaginsenoside R2 | 156980-42-6 |
| 25 | Notopanaxoside A | 920265-99-2 |
| 26 | Ginsenoside Rh4 | 174721-08-5 |
| 27 | 20(R)-ginsenoside Rh1 | 63223-86-9 |
| 28 | Ginsenoside F4 | 126223-28-7 |
| 29 | Ginsenoside Rg8 | 906089-57-4 |
| 30 | 20(S)-protopanaxatriol | 34080-08-5 |
| 31 | Ginsenoside Rg6 | 147419-93-0 |
| “-”:No data. | ||
Tab. 2
Degree values of chemical compositions of PQTS"
| Chemical composition | Degree value | Chemical composition | Degree value |
|---|---|---|---|
| Pseudo-ginsenoside F11 | 43 | Ginsenoside F4 | 21 |
| 20(S)-protopanaxatriol | 38 | Vinaginsenoside R2 | 20 |
| Ginsenoside Rg1 | 35 | Ginsenoside Rg2 | 17 |
| Ginsenoside Rh1 | 29 | Yesanchinoside B | 17 |
| Vinaginsenoside R1 | 28 | Yesanchinoside C | 17 |
| Ginsenoside Rb1 | 26 | Ginsenoside A | 16 |
| 20(R)-ginsenoside Rh1 | 25 | Notopanaxoside A | 13 |
| (24S)-Pseudo-ginsenoside F11 | 25 | Ocotillol | 12 |
| Ginsenoside Rh4 | 25 | Ginsenoside Rg6 | 10 |
| Ginsenoside Re | 24 | Yesanchinoside E | 10 |
| Pseudo-ginsenoside RT4 | 23 | Ginsenoside F3 | 9 |
| Pseudo-ginsenoside RT5 | 23 | Ginsenoside F5 | 8 |
| Ginsenoside F1 | 21 | Majoroside F5 | 3 |
Tab. 3
Binding energy of molecular docking and binding sites of main active compositions and core targets of PQTS"
| Ligand | STAT3 | PIK3CA | EGFR | MAPK14 | |||||
|---|---|---|---|---|---|---|---|---|---|
Affinity (kJ?mol-1) | Binding site | Affinity (kJ?mol-1) | Binding site | Affinity (kJ?mol-1) | Binding site | Affinity (kJ?mol-1) | Binding site | ||
| PF11 | -9.7 | GLY70 ASP71 ARG57 | -10.7 | GLN406 VAL329 ARG330 | -9.0 | ALA80 ASP79 | -10.7 | ASP49 ARG30 ILE28 ILE27 GLN125 | |
| PPT | -7.5 | SER13 ASN58 | -9.8 | MET289 SER107 | -6.0 | ASP22 TYR23 | -8.2 | ASP49 GLY51 FEU52 | |
| Rg1 | -8.7 | GLY22 HIS23 ASP53 ASF71 ASN58 PRO10 ARG57 LEU19 | -10.4 | CYS216 GLY315 PRO313 MET311 ARG330 LYS26 | -8.4 | LYS46 GLY97 CYS98 ARG142 | -8.4 | GLU68 SER53 THR65 ARG64 ASP49 HIS29 ARG30 GLN125 | |
| Rh1 | -6.8 | GLY253 GLY254 | -9.0 | ARG662 ASN170 ARG818 | -8.5 | ILE953 ASP956 ALA755 GLU758 | -8.3 | ARG23 GLU22 | |
| PRT5 | -6.6 | ILE258 GLU324 ASP334 SER514 GLY253 | -9.4 | PRO836 ARG818 | -8.0 | CYS797 ARG841 ASN842 ASP855 LEU718 SER720 GLY721 | -7.4 | LYS152 SER154 ASP168 GLY110 MET109 | |
| Re | -7.2 | PRO333 ALA250 GLN247 ASN400 SER399 | -9.7 | MET833 ARG818 CYS838 | -7.8 | CYS797 SER720 ARG841 | -7.8 | GLU4 GLN3 VAL345 THR91 | |
| 1 | 朱 帅, 张一英, 向 芳, 等. 脑卒中高危人群缺血性脑卒中3年发病影响因素COX回归分析[J]. 中国慢性病预防与控制, 2022, 30(2): 134-137. |
| 2 | 张君琴, 张国新, 张振涛. 急性缺血性脑卒中后认知障碍的危险因素分析[J]. 中风与神经疾病杂志, 2021,38(1): 32-35. |
| 3 | 周啸天, 骆亚莉, 李佳蔚, 等. 补阳还五汤防治缺血性脑卒中作用机制的研究现状[J]. 中国临床药理学杂志, 2022, 38(9):1011-1015 |
| 4 | XIONG H, ZHANG A H, ZHAO Q Q, et al. Discovery of quality-marker ingredients of Panax quinquefolius driven by high-throughput chinmedomics approach[J]. Phytomedicine, 2020, 74: 152928. |
| 5 | LI L, WANG Y, XIU Y, et al. Chemical differentiation and quantitative analysis of different types of panax genus stem-leaf based on a UPLC-Q-exactive orbitrap/MS combined with multivariate statistical analysis approach[J].J Anal Methods Chem,2018,2018:9598672. |
| 6 | 李 伟, 王 莹, 刘 伟. 人参、西洋参非药用部位开发与利用研究进展[J].吉林农业大学学报, 2021, 43(4): 383-392. |
| 7 | 崔德深, 高镇生. 西洋参[M]. 北京: 科学出版社, 1984. |
| 8 | 王爱华, 王丽丽, 刘英梅, 等. 西洋参茎叶总皂苷对大鼠局灶性脑缺血损伤及其炎症反应的影响[J]. 中南药学, 2019, 17(4): 522-526. |
| 9 | 刘 松, 金梅香, 谭兴文. 西洋参茎叶皂苷保护大鼠脑缺血再灌注损伤的作用[J]. 中成药, 2016, 38(2): 418-421. |
| 10 | 曲绍春, 于晓风, 刘 巍, 等. 西洋参茎叶20s-原人参二醇组皂苷对大鼠实验性脑缺血的影响[J]. 中国中药杂志, 2011, 36(12): 1675-1678. |
| 11 | LI J, LUO H H, WANG X F, et al. Exploring the active ingredients and mechanism of qianglidingxuan tablets for vertigo based on network pharmacology and molecular docking[J]. Inform Med Unlocked, 2022, 29: 100877. |
| 12 | HOPKINS A L. Network pharmacology[J]. Nat Biotechnol, 2007, 25(10): 1110-1111. |
| 13 | 周昊言, 孙若岚, 季千惠, 等. 基于网络药理-分子对接解析川芎-赤芍药对干预脑缺血的作用机制[J]. 中国中药杂志, 2021, 46(12): 3007-3015. |
| 14 | LI F J, HATANO T, HATTORI N. Systematic analysis of the molecular mechanisms mediated by coffee in Parkinson’s disease based on network pharmacology approach[J]. J Funct Foods, 2021, 87: 104764. |
| 15 | YU J W, WANG L, BAO L D. Exploring the active compounds of traditional Mongolian medicine in intervention of novel coronavirus (COVID-19) based on molecular docking method[J]. J Funct Foods, 2020, 71: 104016. |
| 16 | DAINA A, MICHIELIN O, ZOETE V. SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules[J]. Nucleic Acids Res,2019,47(W1): W357-W364. |
| 17 | VON MERING C, HUYNEN M, JAEGGI D, et al. STRING: a database of predicted functional associations between proteins[J]. Nucleic Acids Res, 2003, 31(1): 258-261. |
| 18 | 史大臻, 赖思含, 刘俊彤, 等. UPLC-Q/TOF-MS结合UNIFI库快速分析西洋参茎叶三醇皂苷[J]. 特产研究, 2021, 43(4)72-81 |
| 19 | YU Z Y, WU Y L, MA Y J, et al. Systematic analysis of the mechanism of aged citrus peel (Chenpi) in oral squamous cell carcinoma treatment via network pharmacology, molecular docking and experimental validation[J]. J Funct Foods, 2022, 91: 105012. |
| 20 | 曹 姗, 宋文婷, 徐 立, 等. 缺血性脑卒中的氧化/亚硝化应激和神经炎症反应与中西药治疗研究进展[J]. 世界科学技术-中医药现代化, 2021, 23(12):4647-4653 |
| 21 | LI J H, CHEN Z X, ZHANG X G, et al. Bioactive components of Chinese herbal medicine enhance endogenous neurogenesis in animal models of ischemic stroke: a systematic analysis[J]. Medicine (Baltimore), 2016, 95(40): e4904. |
| 22 | YI J H, PARK S W, KAPADIA R, et al. Role of transcription factors in mediating post-ischemic cerebral inflammation and brain damage[J]. Neurochem Int, 2007, 50(7/8): 1014-1027. |
| 23 | 方舒东, 朱也森, 姜 虹, 等. 大鼠短暂性全脑缺血后STAT3表达与神经元凋亡的关系[J]. 上海交通大学学报(医学版), 2007, 27(2): 193-196. |
| 24 | YU L, LIU Z L, HE W D, et al. Hydroxysafflor yellow A confers neuroprotection from focal cerebral ischemia by modulating the crosstalk between JAK2/STAT3 and SOCS3 signaling pathways[J]. Cell Mol Neurobiol, 2020, 40(8): 1271-1281. |
| 25 | LI L, SUN L L, QIU Y, et al. Protective effect of stachydrine against cerebral ischemia-reperfusion injury by reducing inflammation and apoptosis through P65 and JAK2/STAT3 signaling pathway[J]. Front Pharmacol, 2020, 11: 64. |
| 26 | ZHU H, JIAN Z H, ZHONG Y, et al. Janus kinase inhibition ameliorates ischemic stroke injury and neuroinflammation through reducing NLRP3 inflammasome activation via JAK2/STAT3 pathway inhibition[J]. Front Immunol, 2021, 12: 714943. |
| 27 | 吕明义, 邓淑玲, 郭文晏, 等. 木犀草素抑制JAK2/STAT3信号通路减轻大鼠脑缺血再灌注损伤作用的研究[J]. 天津医药, 2022, 50(4): 363-368. |
| 28 | 龚翠兰, 杨仁义, 周德生, 等. 基于miR-370-3p与JAK2/STAT3通路相关性探讨活血荣络方促缺血性脑卒中后血管新生的机制[J]. 中国药理学通报, 2022, 38(2): 297- 304. |
| 29 | CHEN D D, WEI L, LIU Z R, et al. Correction to: pyruvate kinase M2 increases angiogenesis, neurogenesis, and functional recovery mediated by upregulation of STAT3 and focal adhesion kinase activities after ischemic stroke in adult mice[J]. Neurotherapeutics, 2018, 15(3): 836. |
| 30 | 李 月. 基于JAK2/STAT3信号通路探讨复方当归注射液对缺血性脑卒中炎性反应的作用机制[D]. 北京: 北京中医药大学,2020. |
| 31 | SAMAKOVA A, GAZOVA A, SABOVA N, et al. The PI3k/Akt pathway is associated with angiogenesis, oxidative stress and survival of mesenchymal stem cells in pathophysiologic condition in ischemia[J]. Physiol Res, 2019, 68(): S131-S138. |
| 32 | ZHAO E Y, EFENDIZADE A, CAI L P, et al. The role of Akt (protein kinase B) and protein kinase C in ischemia-reperfusion injury[J].Neurol Res,2016,38(4): 301-308. |
| 33 | 张建云, 李婧雯, 张丽红, 等. PI3K/Akt信号通路与缺血性脑卒中的关系及中药干预的研究进展[J]. 中国实验方剂学杂志, 2022, 28(22): 265-275. |
| 34 | CHEN J M, ZHANG X J, LIU X X, et al. Ginsenoside Rg1 promotes cerebral angiogenesis via the PI3K/Akt/mTOR signaling pathway in ischemic mice[J]. Eur J Pharmacol, 2019, 856: 172418. |
| 35 | YUAN L L, SUN S B, PAN X H, et al. Pseudoginsenoside-F11 improves long-term neurological function and promotes neurogenesis after transient cerebral ischemia in mice[J]. Neurochem Int, 2020, 133: 104586. |
| [1] | Shuang HAN,Jingwen HUANG,Yue SHI,Xinyue HUANG,Mengru GUO,Yi ZHENG,Ning MA. Network pharmacology analysis of mechanism of Taohong Siwu Decoction in treating periodontitis and its in vitro experimental validation [J]. Journal of Jilin University(Medicine Edition), 2026, 52(3): 703-718. |
| [2] | Ruihan GE,Chen LI,Shengpeng WANG,Yang LU,Caixia TAN,Haotian CUI,Xinmin WANG,Le ZHANG. Bioinformatic analysis on regulatory mechanism of MAPK-Mcl-1 signaling pathway and macrophage polarization during Bacillus Calmette-Guérin infection and its experimental validation [J]. Journal of Jilin University(Medicine Edition), 2026, 52(2): 440-450. |
| [3] | Xiao LIU,Fei FEI,Tao LIU,Lan QIN. Relationship between serum PI3K and Akt levels and thrombocytopenia in patients with Sjögren’s syndrome and its clinical significance [J]. Journal of Jilin University(Medicine Edition), 2026, 52(2): 483-490. |
| [4] | Jiulin YOU,Liangshu FENG,Xin LI,Xinyu WANG,Shuang WANG,Mingqin ZHU,Lingmin ZHAO,Xingqi SU,Jing WANG,Jiachun FENG,Chuan WANG,Di MA. Changes in serum cytokine levels, immune status and risk factor analysis in patients with acute ischemic stroke [J]. Journal of Jilin University(Medicine Edition), 2026, 52(2): 499-506. |
| [5] | Huiyan ZHU,Min CHEN,Jinxian LI,Chunli LI. Effect of enriched environment on neurofunctional damage in rats with ischemic stroke via transcription factor EB-mediated autophagy [J]. Journal of Jilin University(Medicine Edition), 2026, 52(1): 116-124. |
| [6] | Meng CAI,Yang GUO,Yingfang MA,Jinglei CUI,Jia LUO,Lili WEI,Yunhua ZHANG,Yang WANG. Therapeutic effect of prunetin on myocardial infarction model mice and its mechanism [J]. Journal of Jilin University(Medicine Edition), 2026, 52(1): 125-134. |
| [7] | Huaimin LIANG,Jiacheng JIN,Wenhua CHEN,Yuyao LI,Hangyu WANG,Ke ZHANG,Jinhui WANG. UPLC-Q-TOF/MS and network pharmacology analysis and experimental verification based on potential active ingredients and mechanisms of medicinal Mulberry Leaves in anti-acute kidney injury [J]. Journal of Jilin University(Medicine Edition), 2026, 52(1): 56-69. |
| [8] | Shanshan SUN,Mei LU,Xinfu GAO,LYu Guangyao,Baolei Zhao,LYu Wenwen. Inhibitory effect of Bradykinin 1 receptor antagonist ELN441958 on proliferation of HepG2 cells by regulating Akt/FoxO3a signaling pathway [J]. Journal of Jilin University(Medicine Edition), 2026, 52(1): 70-80. |
| [9] | Zhongzheng LIU,Shubo LIAN,Wenxuan FENG,Xin WEN,Hanyu LIU,Wei HE. Prometive effect of knockdown of KIF3B gene on autophagy in mouse embryonic palatal mesenchymal cells by inhibiting Shh signaling pathway [J]. Journal of Jilin University(Medicine Edition), 2025, 51(6): 1445-1451. |
| [10] | Qu ZHENG,Baoqiang DONG,Xingxing LIN,Xuefeng GUAN,Yu ZHANG,Chaojie WANG,Yiyan Han. Effect of acupuncture on differentiation and apoptosis of quadriceps muscle satellite cells in knee osteoarthritis model rats and its mechanism [J]. Journal of Jilin University(Medicine Edition), 2025, 51(6): 1475-1486. |
| [11] | Bing BAI,Qian ZHANG,Tao PU,Yu NI,Tingting HU,Linhong HU,Yibin YANG. Effect of angiopoietin 1 and tyrosine kinase receptor 2 inhibitor on glucose transportation in endothelial cells and its mechanism [J]. Journal of Jilin University(Medicine Edition), 2025, 51(6): 1487-1497. |
| [12] | Yu YAN,Dandan HUANG,Chunling HONG,Bowen WEI,Yuanyuan YANG,Guanghai YAN,Yilan SONG,Zhemin XIAN. Improvement effect of imperatorin on airway remodeling in bronchial asthma mice and its mechanism [J]. Journal of Jilin University(Medicine Edition), 2025, 51(6): 1508-1517. |
| [13] | Haidong ZHU,Changkun LYU,Wei SHI. Effect of berberine hydrochloride on autophagy of HeLa cells infected with herpes simplex virus type 1 by regulating PI3K/AKT/mTOR signaling pathway [J]. Journal of Jilin University(Medicine Edition), 2025, 51(6): 1607-1617. |
| [14] | Xiaomin YU,Qinghua ZHU,Yilun WANG,Miao REN,Zijia LIU,Yongyi YU,Yuanliang DU,Donghui LIU,Sen GUO,Xiumei FU. Protective effect of adipose-derived stem cells combined with acellular scaffolds on dorsal root ganglion in rats with sciatic nerve injury and its mechanism [J]. Journal of Jilin University(Medicine Edition), 2025, 51(6): 1542-1550. |
| [15] | Yanhong MU,Yingna LI,Jianzeng LIU,Chunhong LUO,Liwei SUN,Rui JIANG. Promotional effect of CHAaHGS on hair growth and its mechanism [J]. Journal of Jilin University(Medicine Edition), 2025, 51(5): 1240-1250. |