吉林大学学报(工学版) ›› 2015, Vol. 45 ›› Issue (2): 624-629.doi: 10.13229/j.cnki.jdxbgxb201502043
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LIU Fu,ZHANG Xiao,HOU Tao,LIU Yun
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[1] Trifonov E N, Sussman J L. The pitch of chromatin DNA is reflected in its nucleotide sequence[J]. Proceedings of the National Academy of Sciences, 1980, 77(7): 3816-3820. [2] Borodovsky M Y, Sprizhitskii Y, Golovanov E, et al. Statistical patterns in primary structures of functional regions in the E. coli genome III[C]∥Computer Recognition of Coding Regions Mol Biol, 1986, 20: 1145-1150. [3] Woese C R, Fox G E. Phylogenetic structure of the prokaryotic domain: the primary kingdoms[J]. Proceedings of the National Academy of Sciences, 1977, 74(11): 5088-5090. [4] Cole J R, Chai B, Marsh T L,et al. The Ribosomal Database Project (RDP-II): previewing a new auto aligner that allows regular updates and the new prokaryotic taxonomy[J]. Nucleic Acids Research, 2003, 31(1):442-443. [5] Olsen G J, Woese C R, Overbeek R. The winds of (evolutionary) change: breathing new life into microbiology[J]. Journal of Bacteriology 1994, 176(1): 1-6. [6] Karlin S, Burge C. Dinucleotide relative abundance extremes: a genomic signature[J]. Trends in Genetics 1995, 11(7): 283-290. [7] Karlin S, Brocchieri L, Mrázek J, et al. A chimeric prokaryotic ancestry of mitochondria and primitive eukaryotes[J]. Proceedings of the National Academy of Sciences, 1999, 96(16):9190-9195. [8] Karlin S, Mrázek J, Ma J, et al. Predicted highly expressed genes in archaic genomes[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(20): 7303-7308. [9] Karlin S, Zhu Z Y, Karlin K D. The extended environment of mononuclear metal centers in protein structures[J]. Proceedings of the National Academy of Sciences, 1997, 94(26):14225-14230. [10] Karlin S, Mrazek J, Campbell A M. Compositional biases of bacterial genomes and evolutionary implications[J]. Journal of Bacteriology, 1997, 179(12): 3899-3913. [11] Nakashima H, Nishikawa K, Ooi T. Differences in dinucleotide frequencies of human, yeast, and escherichia coli genes[J]. DNA Research, 1997, 4(3): 185-192. [12] Karlin S, Ladunga I, Blaisdell B. Heterogeneity of genomes: measures and values[J]. Proceedings of the National Academy of Sciences, 1994, 91(26):12837-12841. [13] Rosen G, Garbarine E, Caseiro D, et al. Metagenome fragment classification using N-mer frequency profiles[J]. Adv Bioinformatics, 2008, 20: 59-69. [14] McHardy A C, Martin H G, Tsirigos A, et al. Accurate phylogenetic classification of variable-length DNA fragments[J]. Nature Methods, 2006, 4(1): 63-72. [15] Patil K R, Haider P, Pope P B, et al. Taxonomic metagenome sequence assignment with structured output models[J]. Nature Methods 2011, 8(3): 191-192. [16] Rosen G L, Reichenberger Erin R, Rosenfeld Aaron M. NBC: the Naive Bayes classification tool webserver for taxonomic classification of metagenomic reads[J]. Bioinformatics, 2011,27:127-129. [17] Koslicki D, Foucart S, Rosen G. Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing[J]. Bioinformatics,2013, 29(17): 2096-2102. [18] Amir A, Zuk O. Bacterial community reconstruction using compressed sensing[J]. J Comput Biol, 2011, 18:1723-1741. [19] Peter Meinicke, Kathrin Petra Aβhauer, Thomas Lingner. Mixture models for analysis of the taxonomic composition of metagenomes[J]. Bioinformatics, 2011, 27(12): 1618-1624. [20] 王国胤,姚一豫,于洪.粗糙集理论与应用研究综述[J].计算机学报,2009, 32(7): 1219-1246. Wang Guo-ying, Yao Yi-yu, Yu Hong. A survey on rough set theory and applications[J]. Chinese Journal of Computers, 2009, 32(7):1219-1246. [21] 张政超.粗糙集理论数据处理方法及其研究[J].计算机技术与发展,2012, 20(4): 13-20. Zhang Zheng-chao. Rough sets data processing method and its research[J]. Computer Technology and Development, 2012, 20(4):13-20. [22] Chandran C P. Feature selection from protein primary sequence database using enhanced quick reduct fuzzy-rough set[J]. Granular Computing, IEEE International Conference, 2008, 8: 111-114. [23] 刘斌,陈钉均.基于粗糙集和遗传算法的道路交通事故分析[J].兰州交通大学学报, 2010, 29(1): 69-71. Liu Bin, Chen Ding-jun. Road traffic accident analysis based on rough sets and genetic algorithm[J]. Journal of Lanzhou Jiaotong University, 2010, 29(1): 69-71. [24] Cover T M, Hart P E. Nearest neighbor pattern classification[J]. IEEE Transactions on Information Theory, 1968, IT-13: 21-27. |
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