吉林大学学报(理学版)

• 化学 • 上一篇    下一篇

苏氨酸分子的构象转变及水分子与羟基自由基的催化机理

闫红彦1, 王佐成2, 佟华2, 李鑫峡2, 张丹2, 孙双双2   

  1. 1. 白城师范学院 计算机科学学院, 吉林 白城 137000; 2. 白城师范学院 物理学院, 吉林 白城 137000
  • 收稿日期:2015-12-07 出版日期:2016-05-26 发布日期:2016-05-20
  • 通讯作者: 佟华 E-mail:tonghua699@126.com

Conformational Transition of Threonine Molecules and CatalyticMechanism of Water Molecules and Hydroxyl Radicals

YAN Hongyan1, WANG Zuocheng2, TONG Hua2, LI Xinxia2, ZHANG Dan2, SUN Shuangshuang2   

  1. 1. College of Computer Science, Baicheng Normal University, Baicheng 137000, Jilin Province, China;2. College of Physics, Baicheng Normal University, Baicheng 137000, Jilin Province, China
  • Received:2015-12-07 Online:2016-05-26 Published:2016-05-20
  • Contact: TONG Hua E-mail:tonghua699@126.com

摘要:

采用密度泛函理论的B3LYP方法和微扰论的MP2方法, 研究苏氨酸分子构象转变机制以及水分子与羟基自由基对氢迁移反应的催化作用. 结果表明: S-苏氨酸向R别苏氨酸的构象转变反应有4个通道, R-别苏氨酸向R-苏氨酸与S-苏氨酸向S-别苏氨酸的构象转变反应各有1个通道; S-苏氨酸向R-别苏氨酸构象转变反应的最高能垒为250.2 kJ/mol; R-别苏氨酸向R-苏氨酸构象转变反应的最高能垒为335.0 kJ/mol; S-苏氨酸向S-别苏氨酸构象转变反应的最高能垒为359.6 kJ/mol; 2个水分子构成的链及水分子/羟基自由基构成的链对质子迁移反应有较好的催化作用, 使S-苏氨酸向R-别苏氨酸构象转变反应的高能垒分别降为128.3 kJ/mol和108.6 kJ/mol.

关键词: 手性, 苏氨酸, 密度泛函理论, 过渡态, 微扰论

Abstract:

Using B3LYP methods of density functional theory and the MP2 methods of perturbation theory, we studied conformational transition mechanism of threonine molecules and catalytic action of water molecules and hydroxyl radicals in the hydrogen transfer reaction. The results show that there are four channels in the conformational transition reaction of S-Thr to R-alloThr. There is one channel in the conformational transitions of R-allo-Thr to R-Thr and S-Thrto S-alloThr. The highest energy barriers  for the conformational transition of S-Thr to R-alloThr, R-alloThr to R-Thr and  S-Thr to S-allo Thr are 250.2,335.0,359.6 kJ/mol. Besides, the chain composed of two water molecules and the chain composed of hydroxyl radical and water molecules
have a better catalytic effect in proton migration reaction, and the highenergy barriers are reduced to 128.3,108.6 kJ/mol for the conformational transition of S-Thr to R-alloThr respectively.

Key words: chirality, threonine, density functional theory, transition state, perturbation theory

中图分类号: 

  • O641.12