Abstract:

Here was presented an accelerated stochastic simulation algorithm for simulating biochemical reaction system with delays. It’s called
the DFAPSleaping algorithm. The DFAPSleaping algorithm minimizes the running time on the premise of preserving the accuracy, so it can improve the efficiency of the algorithm. Numerical experiments show our proposed algorithm can be widely applied to a variety of biochemical reaction systems and be more efficient than the existing algorithms.

Key words: biochemical reaction system with delays; , stochastic simulation algorithm, FAPS algorithm