Journal of Jilin University Science Edition ›› 2019, Vol. 57 ›› Issue (5): 1214-1218.

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Gene Regulatory Network Construction Based on AP Data Source Fusion Algorithm

ZHENG Ming1,2, LIU Guixia2, ZHUO Mugui1   

  1. 1. Guangxi Colleges and University Key Laboratory of Professional Software Technology, Wuzhou University,Wuzhou 543002, Guangxi Zhuang Autonomous Region, China;2. College of Computer Science and Technology, Jilin University, Changchun 130012, China
  • Received:2018-08-05 Online:2019-09-26 Published:2019-09-20
  • Contact: ZHENG Ming E-mail:370505375@qq.com

Abstract: Aiming at the problems of insufficient data and inaccurate results of constructing gene regulatory network algorithm based on single dataset, we proposed a data source fusion algorithm based on availability and responsibility (AP). The gene expression data, protein interaction data and motif data were analyzed and constructed gene regulatory network by controlling and controlled twoway flowing information transmission respectively, and compared with AUC values of three developed models: ReMoDiscovery, CLR and C3Net in yeast genomewide network construction. The comparison results show that the algorithm has higher execution efficiency and stronger convergence in the construction of gene regulatory network algorithm.

Key words: AP algorithm, data source fusion, gene regulatory network, genomewide association

CLC Number: 

  • TP18