J4 ›› 2011, Vol. 29 ›› Issue (5): 436-443.

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Method for Prediction of RNA Interference Efficiency Based on Sirna Sequence Characteristics

XU Bao-lina,YU Da-chuanb,GAO Donga,ZHANG Haoa,LIU Yuan-ninga   

  1. a. College of Computer Science and Technology, Jilin University,Changchun 130012,China;b. Department of Pain,The First Hospital of Jilin University,Changchun 130021,China
  • Online:2011-09-24 Published:2011-11-29

Abstract:

To predict the siRNA(Small interfering Ribonucleic Acid) efficiency accurately, by the statistical analysis of 2 431 siRNA,we found a reliable new method of forecasting.We selected 19 sequence characteristics related to siRNA efficiency with statistical method and made out a clustering method for siRNA inhibiting efficiency level with these characteristics,the correct rate is up to 81.1%. This method provides orientation for high efficient siRNA design.

Key words: ribonucleic acid interference(RNAi), prediction of interference efficiency, sequence characteristic, statistical analysis

CLC Number: 

  • TP399