吉林大学学报(理学版) ›› 2024, Vol. 62 ›› Issue (1): 174-0180.

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利用Markov模型研究Aβ突变体的构象转变过程

姚星宇1, 刘璎锐2, 韩葳葳2, 万由衷1   

  1. 1. 吉林大学 白求恩第三医院, 长春 130033;  2. 吉林大学 生命科学学院, 长春 130012
  • 收稿日期:2023-06-16 出版日期:2024-01-26 发布日期:2024-01-26
  • 通讯作者: 万由衷 E-mail:youzhongwan@jlu.edu.cn

Using Markov Model to Study Conformational Transformation Process of Aβ Mutant

YAO Xingyu1,  LIU Yingrui2,  HAN Weiwei2,  WAN Youzhong1   

  1. 1. Bethune Third Clinical Hospital,  Jilin University,  Changchun 130033,  China;  2. School of Life Sciences,  Jilin University, Changchun 130012,  China
  • Received:2023-06-16 Online:2024-01-26 Published:2024-01-26

摘要: 为抑制淀粉样β多肽(Aβ)从无规卷曲或α-螺旋转变为β-折叠结构,  研究野生型Aβ及其数组突变体的构象变化, 结合Markov模型与分子动力学模拟, 对野生型、  A4型和D7N型Aβ的构象变化过程进行研究,    明确3种Aβ构象的转变路径.  实验结果表明, 野生型Aβ出现一个区域的β-折叠, A4型Aβ构象几乎无变化, 而D7N型Aβ出现两个区域的β-折叠, 说明D7N型突变体具有促β-折叠特性, 该结果为阿尔兹海默症的治疗方法探索提供理论依据.


关键词: 阿尔兹海默症, 淀粉样β多肽,  , 分子动力学模拟, Markov模型

Abstract: In order to suppress the transformation of amyloid β polypeptide (Aβ)  from random curling or α-helix to β-folding structure, we studied the conformational changes of wild type Aβ and its array mutants. Combining Markov model and molecular dynamics simulation, we studied the conformational change precess  of the wild type,  A4 type and D7N type Aβ, and identified the  conformational transformation path of three Aβ types. The experimental results show that one region of β-folding is found in the wild type Aβ, and the conformation of the A4 type Aβ is almost unchanged, while two regions of β-folding are found in the D7N type Aβ, indicating that the D7N type mutant has the characteristic of promoting β-folding. The results provide a theoretical baisis for exploring treatment methods for Alzheimer’s disease.

Key words: Alzheimer’s disease,  , amyloid β polypeptide,  , molecular dynamics simulation,  , Markov model

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