吉林大学学报(理学版) ›› 2023, Vol. 61 ›› Issue (2): 426-436.

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转录组分析sgf73基因缺失对粟酒裂殖酵母生长代谢影响的分子机制

刘欣岚1, 叶姿妤2, 鲁艳2, 侯怡铃2, 周丽倩2, 蒲帝宏2,  丁祥1   

  1. 1. 西华师范大学 环境科学与工程学院,  四川 南充 637009; 
    2. 西华师范大学 生命科学学院, 西南野生动植物资源保护教育部重点实验室, 四川 南充 637009
  • 收稿日期:2022-06-11 出版日期:2023-03-26 发布日期:2023-03-26
  • 通讯作者: 丁祥 E-mail:biostart8083@126.com

Molecular Mechanism of Eeffect of sgf73 Gene Deletion on  Growth and Metabolism of Schizosaccharomyces pombe by Transcriptome Analysis

LIU Xinlan1, YE Ziyu2,  LU Yan2, HOU Yiling2, ZHOU Liqian2, PU Dihong2, DING Xiang1   

  1. 1. College of Environmental Science and Engineering,  China West Normal University,  Nanchong 637009, Sichuan Province, China;   2. Key Laboratory of Southwest China Wildlife Resources Conservation of the Ministry  of Education, College of Life Science,  China West Normal University,  Nanchong 637009, Sichuan Province, China
  • Received:2022-06-11 Online:2023-03-26 Published:2023-03-26

摘要: 为研究粟酒裂殖酵母sgf73基因缺失后的关键基因和关键代谢通路, 采用RNA-Seq测序技术对野生型酵母菌株及sgf73基因缺陷型菌株进行测序及生物信息学分析, 并进行GO和KEGG功能富集分析.  结果表明: sgf73基因缺陷型菌株中高表达基因有1 834个, 极高表达基因有6个, 且有1 714个差异表达基因, 包括934个上调基因, 780个下调基因;   sgf73基因敲除导致细胞代谢和跨膜转运过程异常变化;   MAPK信号通路中参与周期调控cki1,cki2和cdc25基因的下调导致sgf73Δ菌株有丝分裂时间延长; 调控细胞骨架rgf2,rho1和stt4基因的下调导致sgf73Δ菌株肌动蛋白环收缩异常.

关键词: 粟酒裂殖酵母, RNA-Seq测序, sgf73基因, 差异表达基因,  , MAPK信号通路

Abstract: In order to study the key genes and key metabolic pathways after the sgf73 gene was knocked out in Schizosaccharomyces pombe,  the wild\|type yeast strains and sgf73Δ  gene-deficient strains were sequenced and bioinformatics analyzed by RNA-Seq sequencing technology, and the GO and KEGG functional enrichment analysis were carried out.  The results show that in the sgf73Δ gene-deficient strains,  there are 1 834 highly expressed genes,  including 6 extremely highly expressed genes,  and 1 714 differentially expressed genes,  of which 934 genes are up-regulated and 780 genes are down-regulated. The  sgf73 gene knockout leads to  abnormal changes in cellular metabolism and transmembrane transport. The  down-regulation of cki1,cki2 and cdc25 genes involved in cycle regulation in the MAPK signaling pathway leads to prolongation of mitotic time in sgf73Δ strain,  the down-regulation of regulatory cytoskeleton rgf2,rho1 and stt4 genes leads to abnormal contraction  of actin ring of  sgf73Δ strain.

Key words: Schizosaccharomyces pombe,  , RNA-Seq sequencing,  , sgf73 gene,  , differentially expressed genes (DEGs),  , MAPK signaling pathway

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