基于隐马尔可夫模型的转录因子文本挖掘算法

J4 ›› 2012, Vol. 50 ›› Issue (02): 320-322.

Previous Articles Next Articles

An HMM Based Transcription Factor Name Mining Algorithm

WU Xiaozhou¹, WAN Liming², HAN Xiaosong¹, LIANG Yanchun¹, WU Chunguo^1,3

1. College of Computer Science and Technology, Key Laboratory for Symbol Computation and Knowledge Engineeringof National Education Ministry, Jilin University, Changchun 130012, China|2. Research Institute on General Development and Evaluation of Equipment, EAAF of PLA, Beijing 100076, China;3. School of Business, University of Shanghai for Science and Technology, Shanghai 200093, China

Received:2011-12-29 Online:2012-03-26 Published:2012-03-21
Contact: WU Chunguo E-mail:wucg@jlu.edu.cn

Abstract

Abstract:

A text mining algorithm named HMMTFM (hidden Markov model based transcription factor name mining) was presented. The proposed algorithm does not need a dictionary of transcription factor names. A small verb set is defined to filter sentences. Transcription factor names are mined according to the part of speech tagged by hidden Markov model. Experimental results show that the recall rate and precision of HMMTFM come to 74.2% and 77.9%, respectively.

Key words: hidden Markov model, transcription factor, text mining, promoter, bioinformatics

CLC Number:

TP18

TUN Xiao-Zhou, MO Li-Meng, HAN Xiao-Song, LIANG Yan-Chun, TUN Chun-Guo. An HMM Based Transcription Factor Name Mining Algorithm[J].J4, 2012, 50(02): 320-322.

[1]	YANG Guang, JIA Yanxin, CHEN Xiang, XU Shuyuan. Stack Overflow Question Post Classification Method Based on Deep Learning [J]. Journal of Jilin University Science Edition, 2021, 59(4): 922-928.
[2]	WANG Pingfan, LIU Shufen. Adaptive Software Decision Model Based on HMM [J]. Journal of Jilin University Science Edition, 2018, 56(3): 645-649.
[3]	SUN Bing yi, LV Wei, LI Wen yang. Activity Recognition Based on Smart Phone Sensors and SC-HMM Algorithm [J]. Journal of Jilin University Science Edition, 2013, 51(06): 1128-1132.
[4]	ZHANG Lei, YANG Xingyuan, AN Xiaorong, CHEN Yongfu. The Construct of Promotertrap and PolyAtrap Gene TargettingVector and the Preparation of Recipient Myoblast Cell [J]. J4, 2009, 47(6): 1328-1333.
[5]	CHENG Kaidong, LUAN Fangjun, MA Siliang. An Algorithm of Online Handwritten Signature Verification Based on HMM [J]. J4, 2008, 46(05): 940-943.
[6]	WANG Xiu mei, WANG Yan, WANG Shu qin, DU Wei, SUN Fang xun, ZHOU You, SHI Xiao hu. Advances of Operon Prediction in Bioinformatics [J]. J4, 2006, 44(06): 153-156.
[7]	WANG Wei, WANG Yu-hong, CHEN Yu, LI Wei. An Oracle Database System for Computer-assisted Genomic Cloning [J]. J4, 2002, 40(02): 204-208.

An HMM Based Transcription Factor Name Mining Algorithm

PDF (PC)

Like

Knowledge

Abstract

Cite this article

share this article

References

Related Articles 7

Metrics

Comments

Recommended 0