Journal of Jilin University(Earth Science Edition) ›› 2015, Vol. 45 ›› Issue (4): 1198-1204.doi: 10.13278/j.cnki.jjuese.201504206

Previous Articles     Next Articles

Centrifugation Effect on the Functional Diversity of Microbial Community in Fallen Leaves Displaying in BIOLOG Micro-Plates

Li Yumei1,2, Luo Mingqi1,2, Pan Guoyong1,2, Tao Qianye1,2   

  1. 1. Key Laboratory of Computational Geodynamics, Chinese Academy of Sciences, Beijing 100049, China;
    2. College of Earth Science, University of Chinese Academy Sciences, Beijing 100049, China
  • Received:2014-10-28 Published:2015-07-26

PDF (PC)

298

Abstract:

The decomposition of organic matter in terrestrial ecosystem is an important link in the global carbon cycle; however, and the knowledge of this process are still not sufficient. One of the reasons is the lack of a systematical recognition to the changes of microbial community functional diversity during a decomposition of plant litter. Things will get better if the method of BIOLOG micro-plates can be introduced into the initial degradation process of plant litter. Unfortunately, there was no conclusion on how to use this method to the initial degradation, and whether a centrifugal operation should be used during the process of pretreatment. We choose the eluting solution of Beijing birch forest litter as inoculums and consider the effects of centrifugal operation on the BIOLOG micro-plates. The results show that centrifugation can reduce the turbidity (absorbance decreases 0.13) and the interference of color to the solution. At the same time, centrifugation could reduce the measured quantity of microbial communities (AWCD value can be reduced by 0.4). The less the quantity of microbial communities in the sample is, the greater the impact on the functional diversity of soil microbial communities is. Therefore, a specific study target should be the judging basis to determine whether a centrifugation is used for its pretreatment.

Key words: BIOLOG, centrifugation, leaf litter, microbial community, functional diversity

CLC Number: 

  • S718.43

[1] Garland J L, Mills A L. Classification and Characte-rization of Heterotrophic Microbial Communities on the Basis of Patterns of Community-Level Sole-Carbon-Source Tilization[J]. Applied and Environmental Microbiology, 1991, 57(8): 2351-2359.

[2] 吴才武, 赵兰坡. 土壤微生物多样性的研究方法[J]. 中国农学通报, 2011, 27(11): 231-235. Wu Caiwu, Zhao Lanpo.Technologies on Soil Microbiology Diversity[J]. Chinese Agricultural Science Bulletin, 2011, 27(11): 231-235.

[3] 苏小四, 孟祥菲, 张文静, 等. 人工回灌过程中地下水微生物群落变化[J]. 吉林大学学报:地球科学版, 2015, 45(2): 573-583. Su Xiaosi, Meng Xiangfei, Zhang Wenjing, et al. Change of the Groundwater Microbial Community During Artificial Recharge Process[J]. Journal of Jilin University: Earth Science Edition, 2015, 45(2): 573-583.

[4] Li S H, Liu K X, Liao Z W. Method for Simplification of Characteristic Carbon Sources for Biolog Analysis of Soil Microbial Community and Its Application[J]. Scientia Agricultura Sinica, 2010, 43(3): 523-528.

[5] Myers R T, Zak D R, White D C, et al. Landscape-Level Patterns of Microbial Community Composition and Substrate Use in Upland Forest Ecosystems[J]. Soil Science Society of America Journal, 2001, 65(2): 359-367.

[6] Garland J L. Analytical Approaches to the Characterization of Samples of Microbial Communities Using Patterns of Potential C Source Utilization[J]. Soil Biology and Biochemistry, 1996, 28(2): 213-221.

[7] Garland J L. Analysis and Interpretation of Community-Level Physiological Profiles in Microbial Ecology[J]. FEMS Microbiology Ecology, 1997, 24(4): 289-300.

[8] De Fede K L, Panaccione D G, Sexstone A J. Characterization of Dilution Enrichment Cultures Obtained from Size-Fractionated Soil Bacteria by BIOLOGTM Community-Level Physiological Profiles and Restriction Analysis of 16Sr RNA Genes[J]. Soil Biology and Biochemistry, 2001, 33(11): 1555-1562.

[9] De Fede K L, Sexstone A J. Differential Response of Size-Fractionated Soil Bacteria in BIOLOG® Microtitre Plates[J]. Soil Biology and Biochemistry, 2001, 33(11): 1547-1554.

[10] 金剑, 王光华, 陈雪丽, 等. Biolog-ECO解析不同大豆基因型R1期根际微生物群落功能多样性特征[J]. 大豆科学, 2007, 26(4): 565-570. Jin Jian, Wang Guanghua, Chen Xueli, et al. Analysis of Microbial Community Functional Diversity in Rhizosphere of Different Soybean Genotypes R1 Stage Using Biolog-ECO Method[J]. Soybean Science,2007, 26(4): 565-570.

[11] Zak J C, Willig M R, Moorhead D L, et al. Functional Diversity of Microbial Communities: A Quantitative Approach[J]. Soil Biology and Biochemistry, 1994, 26(9): 1101-1108.

[12] Schutter M E, Sandeno J M, Dick R P. Seasonal, Soil Type, and Alternative Management Influences on Microbial Communities of Vegetable Cropping Systems[J]. Biology and Fertility of Soils, 2001, 34(6): 397-410.

[13] 郑丽萍, 龙涛, 林玉锁, 等. Biolog-ECO解析有机氯农药污染场地土壤微生物群落功能多样性特征[J]. 应用与环境生物学报, 2013, 19(5): 759-765. Zheng Liping, Long Tao, Lin Yusuo, et al. Biolog-ECO Analysis of Microbial Community Functional Diversity in Organochlorine Contaminated Soil[J]. Chinese Journal of Applied and Environmental Biology, 2013, 19(5): 759-765.

[14] 郑华, 欧阳志云, 王效科, 等. 不同森林恢复类型对土壤微生物群落的影响[J]. 应用生态学报,2004,15(11): 2019-2024. Zheng Hua, Ouyang Zhiyun, Wang Xiaoke, et al. Effects of Forest Restoration Patterns on Soil Microbial Communities[J]. Chinese Journal of Applied Ecology, 2004, 15(11): 2019-2024.

[15] 董立国, 蒋齐, 蔡进军, 等. 基于Biolog-ECO技术不同退耕年限苜蓿地土壤微生物功能多样性分析[J]. 干旱区研究, 2011, 28(4): 630-637. Dong Liguo, Jiang Qi, Cai Jinjun, et al. Anaysis on Functional Diversity of Edaphon Communities in Medicago Sativa Fields of Different Growth Years Based on Biolog-ECO Plates[J]. Arid Zone Research, 2011, 28(4): 630-637.

[16] 岳冰冰, 李鑫, 张会慧, 等. 连作对黑龙江烤烟土壤微生物功能多样性的影响[J]. 土壤, 2013, 45(1): 116-119. Yue Bingbing, Li Xin, Zhang Huihui, et al. Soil Microbial Diversity and Community Structure Under Continuous Tobacco Cropping[J]. Soil, 2013, 45(1): 116-119.

[17] Williams M A, Rice C W. Seven Years of Enhanced Water Availability Influences the Physiological, Structural, and Functional Attributes of a Soil Microbial Community[J]. Applied Soil Ecology, 2007, 35(3): 535-545.

[18] Kersters I,Van Vooren L,Verschuere L,et al.Utility of the Biolog System for the Characterization of Heterotrophic Microbial Communities[J]. Systematic and Applied Microbiology, 1997, 20(3): 439-447.

[19] Choi K H, Dobbs F C. Comparison of Two Kinds of Biolog Microplates (GN and ECO) in Their Ability to Distinguish Among Aquatic Microbial Communities[J]. Journal of Microbiological Methods, 1999, 36(3): 203-213.

[20] Guckert J B, Carr G J, Johnson T D, et al. Community Analysis by Biolog: Curve Integration for Statistical Analysis of Activated Sludge Microbial Habitats[J]. Journal of Microbiological Methods, 1996, 27(2): 183-197.

[21] Kaiser S K, Guckert J B, Gledhill D W. Comparison of Activated Sludge Microbial Communities Using BiologTM Microplates[J]. Water Science and Technology, 1998, 37(4): 57-63.

[22] Garland J L, Mills A L, Young J S. Relative Effectiveness of Kinetic Analysis vs Single Point Readings for Classifying Environmental Samples Based on Community-Level Physiological Profiles (CLPP)[J]. Soil Biology and Biochemistry, 2001, 33(7): 1059-1066.

[23] Engelen B, Meinken K, Von Wintzingerode F, et al. Monitoring Impact of a Pesticide Treatment on Bacterial Soil Communities by Metabolic and Genetic Fingerprinting in Addition to Conventional Testing Procedures[J]. Applied and Environmental Microbiology, 1998, 64(8): 2814-2821.

[24] Franklin R B, Garland J L, Bolster C H, et al. Impact of Dilution on Microbial Community Structure and Functional Potential: Comparison of Numerical Simulations and Batch Culture Experiments[J]. Applied and Environmental Microbiology, 2001, 67(2): 702-712.

[25] Gomez E, Garland J, Conti M. Reproducibility in the Response of Soil Bacterial Community-Level Physiological Profiles from a Land Use Intensification Gradient[J]. Applied Soil Ecology, 2004, 26(1): 21-30.

[26] Calbrix R, Laval K, Barray S. Analysis of the Potential Functional Diversity of the Bacterial Community in Soil: A Reproducible Procedure Using Sole-Carbon-Source Utilization Profiles[J]. European Journal of Soil Biology, 2005, 41(1): 11-20.

[27] 郑华, 欧阳志云, 方治国, 等. BIOLOG在土壤微生物群落功能多样性研究中的应用[J]. 土壤学报, 2004, 41(3): 456-461. Zheng Hua, Ouyang Zhiyun, Fang Zhiguo, et al. Application of Biolog to Study on Soil Microbial Community Functional Diversity[J]. Acta Pedologica Sinica, 2004, 41(3): 456-461.

[28] Preston-Mafham J, Boddy L, Randerson P F. Analysis of Microbial Community Functional Diversity Using Sole-Carbon-Source Utilisation Profiles:A Critique[J]. FEMS Microbiology Ecology, 2002, 42(1): 1-14.

[29] Warcup J. The Soil-Plate Method for Isolation of Fungi from Soil[J]. Nature, 1950, 166: 117-118.

[30] Warcup J. Isolation of Fungi from Hyphae Present in Soil[J]. Nature, 1955, 175: 953-954.

[31] Verschuere L, Fievez V, Van Vooren L, et al. The Contribution of Individual Populations to the Biolog Pattern of Model Microbial Communities[J]. FEMS Microbiology Ecology, 1997, 24(4): 353-362.

[32] 郑华, 欧阳志云, 赵同谦, 等. 不同森林恢复类型对土壤生物学特性的影响[J]. 应用与环境生物学报, 2006, 12(1): 36-43. Zheng Hua, Ouyang Zhiyun, Zhao Tongqian, et al. Effect of Different Forest Restoration Approaches on Soil Biological Properties[J]. Chinese Journal of Applied and Environmental Biology, 2006, 12(1): 36-43.

[33] Classen A T, Boyle S I, Haskins K E, et al. Community-Level Physiological Profiles of Bacteria and Fungi: Plate Type and Incubation Temperature Influences on Contrasting Soils[J]. FEMS Microbiology Ecology, 2003, 44(3): 319-328.

[34] 杨永华, 姚键, 华晓梅. 农药污染对土壤微生物群落功能多样性的影响[J]. 微生物学杂志, 2000, 20(2): 23-25. Yang Yonghua, Yao Jian, Hua Xiaomei. Effect of Pesticide Pollution Against Functional Microbial Diversity in Soil[J]. Journal of Microbiology, 2000, 20(2): 23-25.

[35] 张万儒, 许本彤, 杨承栋, 等. 山地森林土壤枯枝落叶层结构和功能研究[J]. 土壤学报, 1990, 27(2): 121-131. Zhang Wanru, Xu Bentong, Yang Chengdong, et al. Studies on Structure and Function of Forest Floors of Mountain Forest Soils[J]. Acta Pedologica Sinica, 1990, 27(2): 121-131.

[36] 莫江明, 布朗, 孔国辉, 等. 鼎湖山生物圈保护区马尾松林凋落物的分解及其营养动态研究[J]. 植物生态学报, 1996,20(6): 534-542. Mo Jiangming, Bu Lang, Kong Guohui, et al. Litter Decomposition and Its Nutrient Dynamics of a Pine Forest in Dinghushan Biosphere Reserve[J]. Acta Phytoecologica Sinica, 1996,20(6): 534-542.

[37] Ribeiro C, Madeira M, Araújo M C. Decomposition and Nutrient Release from Leaf Litter of Eucalyptus Globulus Grown Under Different Water and Nutrient Regimes[J]. Forest Ecology and Management, 2002, 171(1): 31-41.

[38] Moretto A S, Distel R A. Decomposition of and Nutrient Dynamics in Leaf Litter and Roots of Poa Pigularis and Stipa Gyneriodes[J]. Journal of Arid Environments, 2003, 55(3): 503-514.
[1] Zhang Haiyan, Peng Tongtong, Wen Yujuan, Gao Simeng, Yang Yuesuo. Microbial Diversity of Mineral Spring and Its Geological and Environmental Controls in Yaoquan Mountain, Wuda-Lianchi of NE China [J]. Journal of Jilin University(Earth Science Edition), 2018, 48(3): 815-826.
[2] Su Xiaosi, Meng Xiangfei, Zhang Wenjing, Shi Xufei, He Haiyang. Change of the Groundwater Microbial Community During Artificial Recharge Process [J]. Journal of Jilin University(Earth Science Edition), 2015, 45(2): 573-583.
[3] YANG Yue-suo, LEI Yu-de, DU Xin-qiang, HAN Jian-chao, CAO Yu-qing. When Groundwater Meets DNA:Petroleum Hydrocarbon Stress vs Biodegradation [J]. J4, 2012, 42(5): 1434-1445.
[4] LIU Miao, CHEN Rui-yang, LI Guang-zhu, LANG Gui-lin. Simulataneous Nitrogen Removal in the Micro-Pressurized Fluidized Hybrid Biological Reactor [J]. J4, 2012, 42(3): 832-837.
[5] LI Yan-xia, KUANG Hong-wei. Molecular Fossils in Neoproterozoic Molar Tooth Carbonates from Liaoning and Jilin Provinces,China and Discussion on the Evolution of Early Life [J]. J4, 2012, 42(1): 136-143.
[6] SUN Yu-jiao, CHEN Cheng, DING Ai-zhong, CHENG Li-rong. Response of Biological Nitrogen Fixation to Eutrophic Water in Guanting Reservoir [J]. J4, 2011, 41(4): 1179-1185.
[7] SONG Zhi-wei, CHENG Xiao-xia, QIAO Yan-yun, PAN Yu, LUO Ke-ji. Influence of Seed Sludge on the Reactivation of Aerobic Sludge Granular After Storage [J]. J4, 2011, 41(3): 873-878.
[8] MA Hui-qiang, ZHANG Lan-ying, LI Shuang, LIU Peng, DENG Hai-jing. Quantity and Community Diversity of Functional Microbes in Biobarrier Remediating of Diesel Contaminated Groundwater [J]. J4, 2011, 41(3): 819-825.
[9] CHEN Tao, LUO Wei, ZHANG Feng-jun, XU Long, ZHANG Guo-li. Application of Modified Vermiculite as Fillings to Biological Fluidized Bed in Low C/N Wastewater Treatment [J]. J4, 2010, 40(2): 394-398.
[10] LIU Peng, ZHANG Lan-ying, LIU Ying-ying, LIU Na, LIU Feng, LIU Hong, CUI Zhe, XU Guo-xin. Pharmaceutical Wastewater Treatment and Its Biological Phase in Combination with Biological Technology [J]. J4, 2010, 40(1): 169-175.
[11] ZOU Dong-lei, WANG Hong-yan, YANG Jin-ling, ZHANG Chun-li, ZHANG Guang-ming, ZHANG Si-xiang. Study on the Treatment of Acrylonitrile Wastewater by Fenton Reagent, Micro-electrolysis and Biological Contact Oxidation Process [J]. J4, 2007, 37(4): 793-0796.
[12] XU Wen-feng,LI Gui-rong,TANG Jie. Research on Carbon Resource on Denitrification Rate for Anoxic Biological Filter [J]. J4, 2007, 37(1): 139-0143.
[13] GAO Yuqiao1, LIU Li, LIAO Qian-jin, SUN Xiao-ming, TENG Yun. Geochemical Characteristics and Origin of Oil and Its Source Rocks in the ShallowMiddle Level:A Case Study of Tangjiahe Oil Field [J]. J4, 2006, 36(04): 535-542.
[14] JIANG Nan, MA Xiao-fan, WANG He-li. Effects of RTD on NH4-N Removal of Inner Loop ThreePhase Biological Fluidized Bed Reactor [J]. J4, 2006, 36(04): 605-608.
[15] ZOU Dong-lei，YUAN Jing-min， ZHAO Xiao-bo， YUAN Wen-shuang， YANG Zhong-ping. Treatment of Synthetic Dying Wastewater with Immobilized Biological Activated Carbon [J]. J4, 2006, 36(04): 613-615.
Viewed
Full text


Abstract

Cited
  Shared   
  Discussed   
No Suggested Reading articles found!
Copyright © Journal of Jilin University(Earth Science Edition), All Rights Reserved.
Tel: +86-431-88502374；13756165364　E-mail: xuebao1956@jlu.edu.cn
Powered by Beijing Magtech Co. Ltd