Journal of Jilin University(Engineering and Technology Edition) ›› 2023, Vol. 53 ›› Issue (12): 3565-3572.doi: 10.13229/j.cnki.jdxbgxb.20220141

Previous Articles    

Pancreas segmentation algorithm based on dual input 3D convolutional neural network

Gui-xia LIU1,2(),Yu-xin TIAN1,2,Tao WANG1,2,Ming-rui MA1,2   

  1. 1.College of Computer Science and Technology,Jilin University,Changchun 130012,China
    2.Key Laboratory of Symbol Computation and Knowledge Engineer of Ministry of Education,Jilin University,Changchun 130012,China
  • Received:2022-02-16 Online:2023-12-01 Published:2024-01-12

Abstract:

Addressing the issue of difficulty in achieving high accuracy in achieving high accuracy in pancreas segmentation, a dual input 3D network to realize panc-reatic segmentation was proposed. Firstly, the boundary area was highlighted by increasing the context residual information between input slices, and then the attention mechanism was introduced to suppress useless features and increase the expression of effective features, which finally improve the accuracy of pancreatic segmentation. The algorithm was evaluated on NIH pancreas segmentation data set. The experiment-al results show that the performance of the algorithm proposed in this paper is superior to the comparison algorithm.

Key words: computer application, medical image, pancreas segmentation, context residual information, attention mechanism

CLC Number: 

  • TP391

Fig.1

Network structure of proposed algorithm"

Fig.2

Residual block"

Fig.3

Squeeze-and-excitation block"

Fig.4

Context residual information"

Fig.5

Segmentation result of proposed algorithm"

Table 1

Results of ablation experiment underdifferent conditions"

实验序号架构包含模块Dice系数 平均值/%
1残差模块82.84±8.98
2残差模块+SE模块83.39±6.74
3残差模块+上下文残差信息83.57±5.88
4残差模块+上下文残差信息+SE模块84.37±5.14

Fig.6

Visualization of different experiments"

Table 2

Performance comparison of context residual information in different directions"

网络包含模块视图平均Dice系数/%最大Dice系数/%最小Dice系数/%
残差模块+SE模块-83.39±6.7490.8853.38
残差模块+SE模块+上下文残差信息水平面84.37±5.1491.6556.35
残差模块+SE模块+上下文残差信息矢状面84.29±5.5791.2154.95
残差模块+SE模块+上下文残差信息冠状面84.47±5.1492.0750.86

Fig.7

Visualization of different directions"

Table 3

Performance comparison of different pancreas segmentation methods"

方法Mean Dice/%Max Dice/%Min Dice/%K-CV
文献[881.27±6.2788.9650.694-CV
文献[981.48±6.23--5-CV
文献[783.18±4.8191.0365.104-CV
文献[1183.70±5.1091.0059.004-CV
文献[1284.10±4.91--4-CV
本文84.37±5.1491.6556.354-CV
1 Zhang Y, Wu J, Liu Y, et al. A deep learning framework for pancreas segmentation with multi-atlas registration and 3D level-set[J]. Medical Image Analysis, 2021, 68: No. 101884.
2 Pandey S, Tekchandani H, Verma S. A literature review on application of machine learning techniques in pancreas segmentation[C]∥2020 First International Conference on Power, Control and Computing Technologies (ICPC2T), Raipur, India, 2020: 401-405.
3 Bazgir O, Barck K, Carano R A D, et al. Kidney segmentation using 3D U-Net localized with Expectation Maximization[C]∥2020 IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI), Albuquerque, NM, USA, 2020: 22-25.
4 Ibrahim S M, Ibrahim M S, Usman M, et al. A study on heart segmentation using deep learning algorithm for mri scans[C]∥2019 13th International Conference on Mathematics, Actuarial Science, Computer Science and Statistics (MACS), Normandy, France, 2019: 1-5.
5 Li C, Tan Y, Chen W, et al. Attention Unet++: a nested attention-aware U-net for liver CT image segmentation[C]∥2020 IEEE International Conference on Image Processing (ICIP), Abu Dhabi, United Arab Emirates, 2020: 345-349.
6 Man Y, Huang Y, Feng J, et al. Deep Q learning driven CT pancreas segmentation with geometry-aware U-Net[J]. IEEE Transactions on Medical Imaging, 2019, 38(8): 1971-1980.
7 Zhou Y, Xie L, Shen W, et al. A fixed-point model for pancreas segmentation in abdominal CT scans[C]∥International Conference on Medical Image Computing and Computer-Assisted Intervention, Quebec, Canada, 2017: 693-701.
8 Roth H R, Lu L, Lay N, et al. Spatial aggregation of holistically-nested convolutional neural networks for automated pancreas localization and segmentation[J]. Medical Image Analysis, 2018, 45: 94-107.
9 Oktay O, Schlemper J, Folgoc L L, et al. Attention U-Net: learning where to look for the pancreas[J/OL]. [2022-01-25].
10 Ronneberger O, Fischer P, Brox T. U-net: convolutional networks for biomedical image segmentation[C]∥International Conference on Medical Image Computing and Computer-assisted Intervention, Munich, Germany, 2015: 234-241.
11 Cai J, Lu L, Xing F, et al. Pancreas segmentation in CT and MRI images via domain specific network designing and recurrent neural contextual learning[J/OL]. [2022-01-28].
12 Liu S, Yuan X, Hu R, et al. Automatic pancreas segmentation via coarse location and ensemble learning[J]. IEEE Access, 2019, 8: 2906-2914.
13 Long J, Shelhamer E, Darrell T. Fully convolutional networks for semantic segmentation[C]∥Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Boston, USA, 2015: 3431-3440.
14 凌语, 孙自强. 基于卷积神经网络的乳腺病理图像识别算法[J]. 江苏大学学报: 自然科学版, 2019, 40(5): 573-578.
Ling Yu, Sun Zi-qiang. Breast pathological image recognition algorithm based on convolutional neural network[J]. Journal of Jiangsu University (Natural Science Edition), 2019, 40(5): 573-578.
15 He K, Zhang X, Ren S, et al. Deep residual learning for image recognition[C]∥Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Las Vegas, USA, 2016: 770-778.
16 He K, Zhang X, Ren S, et al. Identity mappings in deep residual networks[C]∥European Conference on Computer Vision, Amsterdam, Netherlands, 2016: 630-645.
17 Wu Y, He K. Group normalization[C]∥Proceedings of the European conference on computer vision (ECCV), Munich, Germany, 2018: 3-19.
18 Hu J, Shen L, Sun G. Squeeze-and-excitation networks[C]∥Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Salt Lake City, Utah, 2018: 7132-7141.
19 陈洁, 詹永照. 多时间尺度双流CNN与置信融合的视频动作识别[J]. 江苏大学学报: 自然科学版, 2021, 42(3): 318-324.
Chen Jie, Zhan Yong-zhao. Video motion recognition fused with multi-time-scale dual-stream CNN and confidence[J]. Journal of Jiangsu University (Natural Science Edition), 2021, 42(3): 318-324.
20 Howard A, Sandler M, Chu G, et al. Searching for mobilenetv3[C]∥Proceedings of the IEEE/CVF International Conference on Computer Vision, Seoul, Korea, 2019: 1314-1324.
21 Yu F, Koltun V, Funkhouser T. Dilated residual networks[C]∥Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Honolulu, Hawaii, 2017: 472-480.
22 Zhang J, Xie Y, Wang Y, et al. Inter-slice context residual learning for 3D medical image segmentation[J]. IEEE Transactions on Medical Imaging, 2020, 40(2): 661-672.
23 Roth H R, Lu L, Farag A, et al. Deep organ: Multi-level deep convolutional networks for automated pancreas segmentation[C]∥International Conference on Medical Image Computing and Computer-assisted Intervention, Munich, Germany, 2015: 556-564.
[1] Guang HUO,Da-wei LIN,Yuan-ning LIU,Xiao-dong ZHU,Meng YUAN,Di GAI. Lightweight iris segmentation model based on multiscale feature and attention mechanism [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(9): 2591-2600.
[2] Ying HE,Zhuo-ran WANG,Xu ZHOU,Yan-heng LIU. Point of interest recommendation algorithm integrating social geographical information based on weighted matrix factorization [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(9): 2632-2639.
[3] Yun-zuo ZHANG,Xu DONG,Zhao-quan CAI. Multi view gait cycle detection by fitting geometric features of lower limbs [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(9): 2611-2619.
[4] Ming-yao XIAO,Xiong-fei LI,Rui ZHU. Medical image fusion based on pixel correlation analysis in NSST domain [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(9): 2640-2648.
[5] Ya-hui ZHAO,Fei-yu LI,Rong-yi CUI,Guo-zhe JIN,Zhen-guo ZHANG,De LI,Xiao-feng JIN. Korean⁃Chinese translation quality estimation based on cross⁃lingual pretraining model [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(8): 2371-2379.
[6] Xiao-xin GUO,Jia-hui LI,Bao-liang ZHANG. Joint segmentation of optic cup and disc based on high resolution network [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(8): 2350-2357.
[7] Xiang-jiu CHE,Huan XU,Ming-yang PAN,Quan-le LIU. Two-stage learning algorithm for biomedical named entity recognition [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(8): 2380-2387.
[8] Lian-ming WANG,Xin WU. Method for 3D motion parameter measurement based on pose estimation [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(7): 2099-2108.
[9] Fei-fei TANG,Hai-lian ZHOU,Tian-jun TANG,Hong-zhou ZHU,Yong WEN. Multi⁃step prediction method of landslide displacement based on fusion dynamic and static variables [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(6): 1833-1841.
[10] Zhen-hai ZHANG,Kun JI,Jian-wu DANG. Crack identification method for bridge based on BCEM model [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(5): 1418-1426.
[11] Pei-yong LIU,Jie DONG,Luo-feng XIE,Yang-yang ZHU,Guo-fu YIN. Surface defect detection algorithm of magnetic tiles based on multi⁃branch convolutional neural network [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(5): 1449-1457.
[12] Ze-qiang ZHANG,Wei LIANG,Meng-ke XIE,Hong-bin ZHENG. Elite differential evolution algorithm for mixed⁃model two⁃side disassembly line balancing problem [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(5): 1297-1304.
[13] Yan-tao TIAN,Xing HUANG,Hui-qiu LU,Kai-ge WANG,Fu-qiang XU. Multi⁃mode behavior trajectory prediction of surrounding vehicle based on attention and depth interaction [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(5): 1474-1480.
[14] Peng YU,Yan PIAO. New method for extracting person re-identification attributes based on multi-scale features [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(4): 1155-1162.
[15] Yu JIANG,Jia-zheng PAN,He-huai CHEN,Ling-zhi FU,Hong QI. Segmentation-based detector for traditional Chinese newspaper [J]. Journal of Jilin University(Engineering and Technology Edition), 2023, 53(4): 1146-1154.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!