吉林大学学报(医学版)

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基于复方胃炎合剂治疗慢性萎缩性胃炎作用机制的网络药理学和分子对接分析

王秋月,杨正宁,黄晓峰,黄铭涵(),王文荣()   

  1. 福建中医药大学附属第二人民医院脾胃病科,福建 福州 350003
  • 收稿日期:2024-06-04 接受日期:2024-08-26
  • 通讯作者: 黄铭涵,王文荣 E-mail:huangminghan2010@163.com;wangwenrong88@sina.com
  • 作者简介:王秋月(1996-),女,云南省景洪市人,在读博士研究生,主要从事中西医结合防治消化系统疾病方面的研究。
  • 基金资助:
    国家自然科学基金项目(82174365);福建省科技厅自然科学基金项目(2023J01821);中国中医科学院科技创新工程学部委员学术传承与传播专项课题(CI2022E017XB)

Network pharmacology and molecular docking analysis based on mechanism of Compound Gastritis Mixture in treatment of chronic atrophic gastritis

Qiuyue WANG,Zhengning YANG,Xiaofeng HUANG,Minghan HUANG(),Wenrong WANG()   

  1. Department of Spleen and Gastroenterology,Second Affiliated People’s Hospital,Fujian University of Traditional Chinese Medicine,Fuzhou 350003,China
  • Received:2024-06-04 Accepted:2024-08-26
  • Contact: Minghan HUANG,Wenrong WANG E-mail:huangminghan2010@163.com;wangwenrong88@sina.com

摘要:

目的 探讨复方胃炎合剂(CGM)治疗慢性萎缩性胃炎(CAG)的活性成分和作用靶点,联合分子对接分析和细胞实验验证其潜在机制。 方法 从中药系统药理学数据库与分析平台(TCMSP)和Swiss Target Prediction数据库筛选CGM药物的活性成分,获取各药物成分相应的靶点。采用GeneCards和人类在线孟德尔遗传(OMIM)数据库筛选CAG对应的靶点。于Venny2.1.0网络平台中获取CGM与CAG的共同靶点,采用STRING在线平台对“药物-疾病”的共同靶点构建蛋白-蛋白相互作用(PPI)网络,并筛选核心靶点。采用Cytoscape3.9.1软件构建药物成分-疾病-靶点网络,并筛选药物核心成分。采用基因本体论(GO)功能和京都基因与基因组百科全书(KEGG)信号通路富集分析CGM与CAG的共同靶点,AutoDock分析软件对预测的药物主要成分与核心靶点进行分子对接分析。采用脂多糖(LPS)诱导胃黏膜上皮细胞GES-1,构建CAG细胞模型。将GES-1细胞分为空白组(10%血清完全培养基)、模型组(10 mg·L-1 LPS)、不同浓度CGM组(50、100、200、400、800和1 600 g·L-1 CGM+10 mg·L-1 LPS),共培育12、24和48 h,采用CCK-8法检测各组GES-1细胞增殖活性。将GES-1细胞分为空白组(10%血清完全培养基)、模型组(10 mg·L-1 LPS)和CGM组(1 600 g·L-1 CGM+10 mg·L-1 LPS),实时荧光定量PCR(RT-qPCR)法检测各组GES-1细胞中白细胞介素(IL)-6、肿瘤坏死因子(TNF)、丝氨酸/苏氨酸蛋白激酶1(AKT1)、IL-1β和表皮生长因子受体(EGFR)mRNA表达水平。 结果 筛选获得CGM成分198个,与CAG共有的靶点128个。CGM治疗CAG的药物成分主要为槲皮素、山奈酚和木犀草素,主要作用于IL-6、TNF、AKT1、IL-1β和EGFR等靶点。GO功能富集分析显示,排名前15位靶点主要集中于细胞凋亡、炎症反应、细胞增殖等生物学过程(BP),主要包括细胞质、细胞表面、大分子复合体等细胞组分(CC),主要发挥蛋白质、酶、泛素蛋白连接酶等分子功能(MF)。KEGG信号通路富集共获得158条通路,主要涉及癌症相关的通路、TNF信号通路、病毒感染、程度性细胞死亡受体-配体1(PD-L1)/程度性细胞死亡受体1(PD-1)通路、细胞凋亡、NOD样受体信号通路、Toll样受体信号通路、EGFR和IL-17信号通路等。关键靶点IL-6、TNF、IL-1β、AKT1和EGFR与药物核心成分槲皮素、山奈酚和木犀草素的结合能均<-5 kcal·mol-1。CCK-8法检测,与空白组比较,细胞培养24和48 h后,模型组细胞增殖活性均明显降低(P<0.01),且48 h后细胞增殖活性抑制更明显,因此选择LPS诱导48 h为造模时间;与模型组比较,800和1 600 g·L-1 GCM组细胞增殖活性均明显升高(P<0.01),1 600 g·L-1 GCM组细胞增殖活性促进作用更明显,故选该药物干预浓度进行后续实验。RT-qPCR法检测,与空白组比较,模型组细胞中IL-6、TNF、IL-1β、AKT1和EGFR mRNA表达水平均明显升高(P<0.01);与模型组比较,CGM组细胞中IL-6、IL-1β、AKT1和EGFR mRNA表达水平均明显降低(P<0.01)。 结论 GCM可以通过槲皮素、山奈酚和木犀草素等多个药物成分,作用于IL-6、TNF、AKT1、IL-1β和EGFR等多个靶点蛋白,并涉及多种与“炎-癌”有关的通路,起到防治CAG的作用。

关键词: 慢性萎缩性胃炎, 复方胃炎合剂, 网络药理学, 分子对接分析, 实验验证

Abstract:

Objective To investigate the active ingredients and targets of Compound Gastritis Mixture (CGM) in the treatment of chronic atrophic gastritis (CAG) by network pharmacology method, and to validate the potential mechanism combined with molecular docking technology and cellular experiments. Methods The Traditional Chinese Medicine System Analysis Platform (TCMSP) and Swiss Target Prediction databases were used to select the herbal ingredients of CGM and the corresponding targets, and the GeneCards and Online Mendelian Inheritance in Man (OMIM) database were used to screen the targets of CAG. The common targets of CGM and CAG were analyzed from the Venny2.1.0 platform. STRING online platform was used to construct protein-protein interaction (PPI) networks for common drug-disease targets and screen the core targets. Cytoscape 3.9.1 software was used to construct the drug-disease-target network and screen the drug core components. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment were used to analyze the common targets of CGM and CAG, and AutoDock analysis software was used to perform molecular docking analysis of predicted main components of the drugs and core targets. The gastric mucosal epithelial cells GES-1 were induced by lipopolysaccharide (LPS) to construct CAG cell model.The GES-1 cells were divided into blank group (10% serum complete medium),model group (10 mg·L-1 LPS), and different concentrations of CGM groups (50、 100、 200、 400、 800和1 600 g·L-1 CGM+10 mg·L-1 LPS), and cells were incubated for 12, 24, and 48 h. The CCK-8 assay was used to detect the proliferation activities of GES-1 cells. The GES-1 cells were divided into blank group (10% serum complete medium), model group (10 mg·L-1 LPS) and CGM group(1 600 g·L-1 CGM+10 mg·L-1 LPS). Real-time fluorescence quantitative PCR (RT-qPCR) method was used to detect the expression levels of interleukin(IL)-6, tumor necrosis factor (TNF), serine/threonine protein kinase 1 (AKT1),IL-1β, and epidermal growth factor receptor (EGFR) mRNA in various groups. Results A total of 198 ingredients of CGM were screened, and 128 common targets with CAG were identified. The main herbal ingredients of CGM in treatment of CAG were quercetin, kaempferol, and lluteolin, which mainly acted on the core targets of IL-6, TNF, AKT1, IL-1β, and EGFR. The GO function enrichment analysis results showed that the top 15 targets mainly focused on biological processes(BP) such as apoptosis, inflammatory response and cell proliferation, mainly included cellular components (CC) such as cytoplasm, cell surface and macromolecular complexes, and mainly exerted molecular functions (MF)such as proteins, enzymes and ubiquitin-protein ligases. A total of 158 pathways were obtained from KEGG signalling pathway enrichment, mainly involved cancer-related pathways, TNF signalling pathways, viral infection, programmed cell death-ligand 1(PD-L1)/ programmed cell death protein-1 (PD-1) pathways, apoptosis, NOD-like receptor signalling pathways, Toll-like receptor signalling pathways, EGFR and IL-17 signalling pathways.The binding energies of the core targets IL-6, TNF, IL-1β, AKT1, and EGFR with main herbal ingredients quercetin, kaempferol, and luteolin were<-5 kcal·mol-1. The CCK-8 assay results showed that compared with blank group, after 24 and 48 h of cell culture, the proliferation activities of cells in model group were significantly decreased (P<0.01), and the inhibition of the proliferation activity was more obvious after 48 h; therefore, 48 h was selected for the modeling time; compared with model group, the proliferation activities of cells in 800 and 1 600g·L-1 GCM groups were significantly decreased (P<0.01), and the promotion of cell proliferation activity was more obvious in 1 600g·L-1 GCM group, so the intervening concentration of this drug was selected for the subsequent experiments. The RT-qPCR method results showed that compared with blank group, the expression levels of IL-6, TNF, IL-1β, AKT1 and EGFR mRNA in the cells in model group were significantly increased (P<0.01); compared with model group, the expression levels of IL-6, IL-1β, AKT1 and EGFR mRNA in the cells in CGM group were significantly decreased (P<0.01). Conclusion CGM may play a role in the prevention and treatment of CAG through multiple ingredients such as quercetin, kaempferol and lignocerol, acting on the multiple target proteins such as IL-6, TNF, AKT1, IL-1β, and EGFR, as well as involving a variety of “inflammatory-cancer-related” pathways.

Key words: Chronic atrophic gastritis, Compound Gastritis Mixture, Network pharmacology, Molecular docking, Experiment verification

中图分类号: 

  • R285.5