Journal of Jilin University(Medicine Edition) ›› 2022, Vol. 48 ›› Issue (1): 188-194.doi: 10.13481/j.1671-587X.20220123
• Research in clinical medicine • Previous Articles Next Articles
Nan LI1,Lei CHEN1,Tianmin XU2,Kun ZHANG3()
Received:
2021-04-21
Online:
2022-01-28
Published:
2022-01-17
Contact:
Kun ZHANG
E-mail:zk303@jlu.edu.cn
CLC Number:
Nan LI,Lei CHEN,Tianmin XU,Kun ZHANG. Bioinformatics analysis on screening of extracellular matrix related genes in patients with endometriosis[J].Journal of Jilin University(Medicine Edition), 2022, 48(1): 188-194.
Tab.1
Distribution of DEGs in GO enrichment"
Description | Gene | P |
---|---|---|
Extracellular matrix | DSP, RARRES2, COL8A2, HTRA1, BGN, LTBP2, AEBP1, THBS2, NID2, LMCD1, DCN | 1.39E-07 |
Extracellular space | PTGIS, CFH, CCL21, HTRA1, LTBP2,AEBP1, DCN, BMP6,ERBB3, SCGB2A1, DPYSL3, GPC3, LMCD1, SCG2 | 0.001 265 |
Extracellular region | COL16A1, CFH, CCL21, RARRES2, HTRA1, BGN, PLA2G5, THBS2, NID2, DCN,PDGFRL, BMP6, C7, OLFML1, COL8A2 | 0.002 173 |
Proteinaceousm extracellular matrix | COL16A1, CCL21, COL8A2, BGN,GPC3, LTBP2 | 0.003 247 |
Wound healing single organismal | DSP, SCARB1, CDH3, ERBB3, DCN | 2.91E-04 |
Cell-cell adhesion | DSP, CDH3, COL8A2, CD24, MPZL | 27.07E-04 |
Kidney development | PAX8, TCF21, DCN, BMP6 | 0.004 906 |
Anatomical structure morphogenesis | PAX8, GPC3, LYVE1, MPZL2 | 0.005 919 |
Glycosaminoglycan metabolic process | BGN, GPC3, DCN | 0.005 939 |
Extracellular - matrix organization | COL16A1, COL8A2, BGN, NID2, DCN | 0.007 783 |
Cell adhesion | CDH3, COL16A1, THBS2, CD24, GRHL2, NID2, LYVE1 | 0.009 879 |
Tab. 2
Top 20 core genes in connectivities"
Gene | Description | Degree |
---|---|---|
DCN | Decorin | 22 |
EPCAM | Epithelial cell adhesion molecule | 21 |
BGN | Biglycan | 21 |
FABP4 | Fatty acid binding protein 4 | 20 |
NTRK2 | Neurotyrosine kinase receptor | 20 |
GPC3 | Glypican3 | 16 |
ERBB3 | Epidermal growth factor receptor 3 | 16 |
CD24 | Cluster of differentiationprotein 24 | 14 |
NID2 | Nidogen-2 | 14 |
THBS2 | Thrombospondin-2 | 14 |
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