Journal of Jilin University(Medicine Edition) ›› 2022, Vol. 48 ›› Issue (1): 188-194.doi: 10.13481/j.1671-587X.20220123

• Research in clinical medicine • Previous Articles     Next Articles

Bioinformatics analysis on screening of extracellular matrix related genes in patients with endometriosis

Nan LI1,Lei CHEN1,Tianmin XU2,Kun ZHANG3()   

  1. 1.Department of Clinical Laboratory,Second Hospital,Jilin University,Changchun 130041,China
    2.Department of Obstetrics and Gynecology,Second Hospital,Jilin University,Changchun 130041,China
    3.Research Center,Second Hospital,Jilin University,Changchun 130041,China
  • Received:2021-04-21 Online:2022-01-28 Published:2022-01-17
  • Contact: Kun ZHANG E-mail:zk303@jlu.edu.cn

Abstract: Objective

To screen the differentially expressed genes (DEGs) of endometriosis (EMS) by bioinformatics tools,and to provide theoretical basis for clarifyinng the pathogenesis of EMS, and to find a new research direction for the diagnosis and treatment of EMS.

Methods

The datasets (GSE25628, GSE23339 and GSE7305) including EMS tissue and normal endometrial tisue were downloaded from the Gene Expression Omnibus(GEO) database by searching for endometriosis. The GE02R online analvsis tools were used to screen for the DEGs in the EMS tissue and the normal endometrial tissue. Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used to analyze the function and pathway enrichment of DEGs, the STRING database was used to establish the protein-protein interaction (PPI) network. Finally,the PPI network was analyzed and visualized by Cytoscape software, and the top ten core genes were screened.

Results

After the DEGs analysis, a total of 27 up-regulated DEGs and 43 down-regulated DEGs were identified. The GO enrichment analysis results showed that DEGs were mainly enriched in the extracellular matrix, extracellular space, extracellular region and so on. The results of KEGG pathway analysis demonstrated that DEGs were mainly enriched in phosphate inositol metabolic signal pathway.Through STRING and Cytoscape softwares, the top 10 core genes with the highest connectivities in the PPI network were screened out, including DCN, EPCAM, BGN, FABP4, NTRK2, GPC-3, ERBB3, CD24, NID2, and THBS2. Among them, DCN, BGN, NID2, and THBS2 were associated with the biological function of extracellular matrix.

Conclusion

The disorder of extracellular matrix-related genes may play an important role in the occurrence and development of EMS, and the extracellular matrix-related genes may become the biomarkers and for early diagnosis and therapeutic targets of EMS.

Key words: Endometriosis, Bioinformatics, Decorin, Biglycan, Nidogen2, Throm-bospondin 2

CLC Number: 

  • R711.71