Journal of Jilin University(Medicine Edition) ›› 2023, Vol. 49 ›› Issue (5): 1366-1374.doi: 10.13481/j.1671-587X.20230534
• Methodology • Previous Articles
Xiaoying ZHAO,Jiansheng SU,Jiahui MA,Yuefeng WANG,Dan WANG,Liyuan SUN()
Received:
2022-12-03
Online:
2023-09-28
Published:
2023-10-26
Contact:
Liyuan SUN
E-mail:jlsunliyuan@163.com
CLC Number:
Xiaoying ZHAO,Jiansheng SU,Jiahui MA,Yuefeng WANG,Dan WANG,Liyuan SUN. Bioinformatics analysis based on activity of heterotrimeric peptide H5LL and construction of recombinant Lactic acid bacteria expression vector[J].Journal of Jilin University(Medicine Edition), 2023, 49(5): 1366-1374.
Tab. 3
Prediction results of physical and chemical properties of H5LL"
Physical and chemical properties | Parameter |
---|---|
Number of amino acids | 36 |
Total number of negatively charged residues | 2 |
Total number of positively charged residues | 12 |
pI | 11.43 |
Hydrophobic amino acid percentage(η/%) | 25.00 |
Instability index | 30.08 |
Aliphatic index | 54.17 |
GRAVY | -1.578 |
Tab.4
Predicted results of H5LL digestion sites"
Name of digestion site | No.of cleavages | Position of cleavage site |
---|---|---|
Asp-N endopeptidase + N-terminal Glu | 1 | 30 |
Glutamyl endopeptidase | 1 | 13 |
Staphylococcal peptidase Ⅰ | 1 | 13 |
Formic acid | 1 | 31 |
Asp-N endopeptidase + N-terminal Glu | 2 | 12 30 |
Pepsin (pH1.3) | 4 | 22,31,33,35 |
Pepsin(pH>2.0) | 4 | 22,31,33,35 |
Chymotrypsin-high specificity | 5 | 7,11,21,22,32 |
Arg-C proteinase | 6 | 3,9,19,24,28,34 |
Clostripain | 6 | 3,9,19,24,28,34 |
LysN | 6 | 1,7,9,13,22,29 |
LysC | 6 | 2,8,10,14,23,30 |
Thermolysin | 7 | 10,21,24,25,28,32,35 |
Trypsin | 12 | 2,3,8,9,10,14,19,23,24,28,30,34 |
Proteinase K | 12 | 1,7,11,13,21,22,25,26,29,32,33,36 |
Chymotrypsin-low specificity | 13 | 4,5,7,11,12,15,16,18,21,22,32,33,36 |
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