Journal of Jilin University(Medicine Edition) ›› 2022, Vol. 48 ›› Issue (1): 94-103.doi: 10.13481/j.1671-587X.20220112
• Research in basic medicine • Previous Articles Next Articles
Hao DONG1,2,Haizhen JIANG1,2,Chao LI1,2,Dengke GAO1,2,Yaping JIN1,2,Huatao CHEN1,2()
Received:
2021-06-11
Online:
2022-01-28
Published:
2022-01-17
Contact:
Huatao CHEN
E-mail:htchen@nwafu.edu.cn
CLC Number:
Hao DONG,Haizhen JIANG,Chao LI,Dengke GAO,Yaping JIN,Huatao CHEN. Construction of mouse NR1D1 gene overexpression vector and its bioinformatics analysis[J].Journal of Jilin University(Medicine Edition), 2022, 48(1): 94-103.
Tab.1
Primer sequences of RT-qPCR"
Gene | Primer sequence(5'-3') | Product length(bp) | Annealing temperature(θ/℃) |
---|---|---|---|
hmNR1D1 | F: CGGGAGGTGGTAGAGTTTGC R: TCCTTCACGTTGAACAACGA | 134 | 60 |
hGAPDH | F: TCAACGGATTTGGTCGTATTG R: TGGGTGGAATCATATTGGAAC | 136 | 60 |
In hmNR1D1, h standed for human and m standed for mouse;in hGAPDH, h standed for human. |
Tab. 2
Amino acid composition of mouse NR1D1 protein"
Animo acid | n | Frequency(η/%) | Animo acid | n | Frequency(η/%) |
---|---|---|---|---|---|
Ala (A) | 39 | 6.3 | Lys (K) | 20 | 3.3 |
Arg (R) | 36 | 5.9 | Met (M) | 19 | 3.1 |
Asn (N) | 36 | 5.9 | Phe (F) | 26 | 4.2 |
Asp (D) | 20 | 3.3 | Pro (P) | 51 | 8.3 |
Cys (C) | 15 | 2.4 | Ser (S) | 86 | 14.0 |
Gln (Q) | 29 | 4.7 | Thr (T) | 38 | 6.2 |
Gly (G) | 41 | 6.7 | Trp (W) | 3 | 0.5 |
His (H) | 17 | 2.8 | Tyr (Y) | 11 | 1.8 |
Ile (I) | 12 | 2.0 | Val (V) | 30 | 4.9 |
Leu (L) | 57 | 9.3 | Glu (E) | 29 | 4.7 |
1 | LAZAR M A, HODIN R A, DARLING D S, et al. A novel member of the thyroid/steroid hormone receptor family is encoded by the opposite strand of the rat c-erbA alpha transcriptional unit[J].Mol Cell Biol, 1989,9(3): 1128-1136. |
2 | MARVIN K A, REINKING J L, LEE A J, et al. Nuclear receptors homo sapiens Rev-erb beta and Drosophila melanogaster E75 are thiolate-ligated heme proteins which undergo redox-mediated ligand switching and bind CO and NO[J]. Biochemistry, 2009, 48(29): 7056-7071. |
3 | YIN L, WU N, LAZAR M A. Nuclear receptor Rev-erb alpha: a heme receptor that coordinates circadian rhythm and metabolism[J]. Nucl Recept Signal, 2010, 8: e001. |
4 | CASTAGNÉ C, TERENZI H, ZAKIN M M, et al. Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation[J]. Biochimie, 2000, 82(8): 739-748. |
5 | RAMAKRISHNAN S N, LAU P, BURKE L J, et al. Rev-erbβ regulates the expression of genes involved in lipid absorption in skeletal muscle cells[J]. J Biol Chem, 2005, 280(10): 8651-8659. |
6 | RAGHURAM S, STAYROOK K R, HUANG P, et al. Identification of heme as the ligand for the orphan nuclear receptors REV-ERBalpha and REV-ERB beta[J]. Nat Struct Mol Biol, 2007,14(12):1207-1213. |
7 | BUGGE A, FENG D, EVERETT L J, et al. Rev-erb and Rev-erb coordinately protect the circadian clock and normal metabolic function[J]. Genes Dev, 2012,26(7): 657-667. |
8 | PREITNER N, DAMIOLA F, LOPEZ-MOLINA L, et al. The orphan nuclear receptor REV-ERB alpha controls circadian transcription within the positive limb of the mammalian circadian oscillator[J]. Cell, 2002, 110(2): 251-260. |
9 | TRIQUENEAUX G, THENOT S, KAKIZAWA T, et al. The orphan receptor Rev-erb alpha gene is a target of the circadian clock pacemaker[J]. J Mol Endocrinol, 2004, 33(3): 585-608. |
10 | HARDING H P, LAZAR M A. The monomer-binding orphan receptor Rev-Erb represses transcription as a dimer on a novel direct repeat[J]. Mol Cell Biol, 1995, 15(9): 4791-4802. |
11 | MAKISHIMA M. Nuclear receptors as targets for drug development: regulation of cholesterol and bile acid metabolism by nuclear receptors[J]. J Pharmacol Sci, 2005, 97(2): 177-183. |
12 | GRANT D, YIN L, COLLINS J L, et al. GSK4112, a small molecule chemical probe for the cell biology of the nuclear heme receptor Rev-erbα[J]. ACS Chem Biol, 2010, 5(10): 925-932. |
13 | SOLT L A, WANG Y J, BANERJEE S, et al. Regulation of circadian behaviour and metabolism by synthetic REV-ERB agonists[J].Nature,2012,485(7396): 62-68. |
14 | LI C, ZHANG L, MA T, et al. Bisphenol A attenuates testosterone production in Leydig cells via the inhibition of NR1D1 signaling[J].Chemosphere,2021,263: 128020. |
15 | BONNELYE E, VANACKER J M, DESBIENS X,et al.Rev-erb beta, a new member of the nuclear receptor superfamily, is expressed in the nervous system during chicken development[J]. Cell Growth Differ, 1994, 5(12): 1357-1365. |
16 | CHO H, ZHAO X, HATORI M, et al. Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-Β[J]. Nature, 2012, 485(7396): 123-127. |
17 | 李翠梅. 双酚A通过生物钟基因Nr1d1影响睾酮合成的机制研究[D]. 杨凌: 西北农林科技大学, 2019. |
18 | ERCOLANI L, FERRARI A, DE MEI C, et al. Circadian clock: Time for novel anticancer strategies?[J]. Pharmacol Res, 2015, 100: 288-295. |
19 | GEKAKIS N, STAKNIS D, NGUYEN H B, et al. Role of the CLOCK protein in the mammalian circadian mechanism[J]. Science, 1998, 280(5369): 1564-1569. |
20 | YOO S H, KO C H, LOWREY P L, et al. A noncanonical E-box enhancer drives mouse Period2 circadian oscillations in vivo [J]. PNAS, 2005, 102(7): 2608-2613. |
21 | OHNO T, ONISHI Y, ISHIDA N. A novel E4BP4 element drives circadian expression of mPeriod2[J]. Nucleic Acids Res, 2007, 35(2): 648-655. |
22 | CHAIX A, ZARRINPAR A, PANDA S. The circadian coordination of cell biology[J]. J Cell Biol, 2016, 215(1): 15-25. |
23 | EVERETT L J, LAZAR M A. Nuclear receptor Rev-erb α: up, down, and all around[J]. Trends Endocrinol Metab, 2014, 25(11): 586-592. |
24 | HUNTER A L, PELEKANOU C E, ADAMSON A, et al. Nuclear receptor REVERBα is a state-dependent regulator of liver energy metabolism[J]. PNAS, 2020, 117(41): 25869-25879. |
25 | WANG J, LIU N, LIU Z, et al. The orphan nuclear receptor Rev-erb beta recruits Tip60 and HDAC1 to regulate apolipoprotein CIII promoter[J]. Biochim Biophys Acta, 2008, 1783(2): 224-236. |
26 | DELEZIE J, DUMONT S, DARDENTE H, et al. The nuclear receptor REV-ERBα is required for the daily balance of carbohydrate and lipid metabolism[J]. FASEB J, 2012, 26(8): 3321-3335. |
27 | LE MARTELOT G, CLAUDEL T, GATFIELD D, et al. REV-ERBalpha participates in circadian SREBP signaling and bile acid homeostasis[J]. PLoS Biol, 2009, 7(9): e1000181. |
28 | WOLDT E, SEBTI Y, SOLT L A, et al. Rev-erb-α modulates skeletal muscle oxidative capacity by regulating mitochondrial biogenesis and autophagy[J]. Nat Med, 2013, 19(8): 1039-1046. |
29 | ZHANG T P, ZHAO M J, LU D Y, et al. REV-ERBα regulates CYP7A1 through repression of liver receptor homolog-1[J].Drug Metab Dispos,2018,46(3):248-258. |
30 | XING C, HUANG X, ZHANG Y, et al. Sleep disturbance induces increased cholesterol level by NR1D1 mediated CYP7A1 inhibition[J]. Front Genet, 2020, 11: 610496. |
31 | MIGITA H, MORSER J, KAWAI K. Rev-erbα upregulates NF-κB-responsive genes in vascular smooth muscle cells[J]. FEBS Lett, 2004, 561(1-3): 69-74. |
32 | MAZZOCCOLI G, SOTHERN R B, GRECO A,et al. Time-related dynamics of variation in core clock gene expression levels in tissues relevant to the immune system[J].Int J Immunopathol Pharmacol,2011,24(4): 869-879. |
33 | CHANDRA V, MAHAJAN S, SAINI A, et al. Human IL10 gene repression by Rev-erbα ameliorates Mycobacterium tuberculosis clearance[J]. J Biol Chem, 2013, 288(15): 10692-10702. |
34 | ZVONIC S, PTITSYN A A, CONRAD S A, et al. Characterization of peripheral circadian clocks in adipose tissues[J]. Diabetes, 2006, 55(4): 962-970. |
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