Journal of Jilin University(Medicine Edition) ›› 2024, Vol. 50 ›› Issue (1): 161-167.doi: 10.13481/j.1671-587X.20240120
• Research in clinical medicine • Previous Articles
Yang YU,Dan TIAN,Donghe NI,Duo ZHANG()
Received:
2023-01-31
Online:
2024-01-28
Published:
2024-01-31
Contact:
Duo ZHANG
E-mail:beihuazhangduo@126.com
CLC Number:
Yang YU,Dan TIAN,Donghe NI,Duo ZHANG. Network pharmacologry and molecular docking analysis based on mechanism of monk fruit in treatment of diabetic nephropathy[J].Journal of Jilin University(Medicine Edition), 2024, 50(1): 161-167.
Tab.2
PPI network targets and topological parameters"
Name | Degree | Closeness | Radiality | Stress | Clustering coefficient |
---|---|---|---|---|---|
AKT1 | 10 | 14.916 67 | 4.571 43 | 242 | 0.111 11 |
RELA | 9 | 14.666 67 | 4.619 05 | 150 | 0.277 78 |
JUN | 9 | 14.833 33 | 4.666 67 | 210 | 0.250 00 |
TNF | 8 | 14.000 00 | 4.523 81 | 206 | 0.321 43 |
IKBKB | 5 | 12.333 33 | 4.333 33 | 62 | 0.400 00 |
NOS2 | 5 | 12.666 67 | 4.428 57 | 42 | 0.600 00 |
PPARG | 4 | 11.666 67 | 4.238 10 | 60 | 0.500 00 |
CASP8 | 4 | 11.333 33 | 4.142 86 | 32 | 0.500 00 |
MAPK8 | 4 | 11.250 00 | 4.095 24 | 42 | 0.333 33 |
STAT1 | 3 | 11.000 00 | 4.142 86 | 24 | 0.666 67 |
CASP3 | 3 | 10.500 00 | 3.952 38 | 18 | 0.333 33 |
PIK3CA | 3 | 11.083 33 | 4.142 86 | 22 | 0.333 33 |
PRKCA | 2 | 9.583 33 | 3.809 52 | 0 | 1.000 00 |
VCAM1 | 2 | 9.250 00 | 3.666 67 | 76 | 0.000 00 |
GSTP1 | 2 | 9.583 33 | 3.809 52 | 0 | 1.000 00 |
BCL2 | 2 | 9.866 67 | 3.809 52 | 10 | 0.000 00 |
CASP9 | 2 | 9.533 33 | 3.714 29 | 0 | 1.000 00 |
INSR | 2 | 9.533 33 | 3.714 29 | 0 | 1.000 00 |
NOS3 | 2 | 10.583 33 | 4.095 24 | 0 | 1.000 00 |
SLC2A4 | 1 | 7.750 00 | 3.285 71 | 0 | 0 |
ICAM1 | 1 | 6.683 33 | 2.714 29 | 0 | 0 |
HMOX1 | 1 | 8.916 67 | 3.714 29 | 0 | 0 |
Tab. 3
Binding energy and binding sites between molecular docking of main active ingredients of monk fruit and key targets"
Protein | Ligand | Affinity(kJ·mol-1) | Binding site |
---|---|---|---|
AKT1 | Kaempferol | -6.54 | LEU-52,GLU-40, GLN-47,LYS-59 |
RELA | Kaempferol | -7.18 | ASP-21,GLU-17, GLU-20,VAL-51, ASN-50,GLY-54 |
JUN | Kaempferol | -5.07 | DT-215,DG-308, DC-310 |
TNF | Kaempferol | -7.32 | ASN-34,LEU-93, ARG-32,HIS-15, VAL-150 |
IKBKB | Beta-sitosterol | -6.03 | GLN-743,LEU-742, TRP-741 |
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